Package: PAGWAS 2.0
PAGWAS: Pathway Analysis Methods for Genomewide Association Data
Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's product method is included as well.
Authors:
PAGWAS_2.0.tar.gz
PAGWAS_2.0.zip(r-4.7)PAGWAS_2.0.zip(r-4.6)PAGWAS_2.0.zip(r-4.5)
PAGWAS_2.0.tgz(r-4.6-any)PAGWAS_2.0.tgz(r-4.5-any)
PAGWAS_2.0.tar.gz(r-4.7-any)PAGWAS_2.0.tar.gz(r-4.6-any)
PAGWAS_2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PAGWAS/json (API)
| # Install 'PAGWAS' in R: |
| install.packages('PAGWAS', repos = c('https://mevangelou.r-universe.dev', 'https://cloud.r-project.org')) |
- genes - A data frame of 20 artificial genes with their chromosomes and positions on the genome
- genotypes - Genotypes for 100 SNPs and 75 individuals
- list.of.parameters - A list with possible hyper-parameters for NBF
- pathways - A list of 2 pathways with their gene members
- SNPs - A data frame of 100 artificial SNPs with their chromosomes and positions on the genome
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:f72f5ebcca. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 102 | ||
| source / vignettes | OK | 126 | ||
| linux-release-x86_64 | ERROR | 108 | ||
| macos-release-arm64 | ERROR | 134 | ||
| macos-oldrel-arm64 | ERROR | 165 | ||
| windows-devel | ERROR | 78 | ||
| windows-release | ERROR | 67 | ||
| windows-oldrel | ERROR | 59 | ||
| wasm-release | OK | 90 |
Exports:create.pathway.dfFM.chi.pvalueNBFSNALSNAL.calculationsnps.to.genessnps.to.pathways
